AI that can model and design the genetic code for all domains of life - Sync #507
I hope you enjoy this free post. If you do, please like ❤️ or share it, for example by forwarding this email to a friend or colleague. Writing this post took around eight hours to write. Liking or sharing it takes less than eight seconds and makes a huge difference. Thank you! AI that can model and design the genetic code for all domains of life - Sync #507Plus: Grok 3; Figure shows its in-house AI model for humanoid robots; HP acquires Humane AI’s IP; Meta explores robotics and announces LlamaCon; Microsoft's quantum chip; and more!
Hello and welcome to Sync #507! For this week’s main story, I have chosen to highlight Evo 2, the latest AI model from Arc Institute that can model and design the genetic code for all domains of life. Elsewhere in AI, xAI has released its latest model, Grok 3, while looking to raise $10 billion for a $75 billion valuation. In other AI news, Mira Murati, former OpenAI CTO, has revealed her new AI startup, HP has acquired Humane AI’s IP, Meta has announced LlamaCon 2025, and OpenAI is attempting to “uncensor” ChatGPT while expanding Operator to more countries. Over in robotics, Figure has unveiled Helix, its in-house developed Vision-Language-Action model for humanoid robots. We also have the latest research on human-robot collaboration from Meta, along with hints at a humanoid robotics project at the company. Beyond that, this week’s issue of Sync also features how living electronics could heal bodies and minds, Microsoft’s latest quantum computing chip, a conversation with Jeff Dean and Noam Shazeer—two of the most influential figures in AI research—on their work at Google, and how Sam Altman sidestepped Elon Musk to win over Donald Trump. Enjoy! AI that can model and design the genetic code for all domains of lifeAI has many exciting applications, but the one that fascinates me most is its use in biology. Biological systems are incredibly complex, with countless interacting mechanisms, making understanding what is going on at the level of cells, proteins or DNA challenging. The introduction of computational biology and machine learning solutions greatly helped us understand biological systems. With AlphaFold, we can now predict the shape of proteins just from their DNA sequence. We used that technology to create a database of 200 million protein structures for researchers to use. Meanwhile, many startups use AI tools to find candidates for drugs or just use AI to generate these drugs. This week, we got a new tool in the computational biology toolkit—Evo 2, developed by researchers at Arc Institute, a research lab focusing on solving biological problems with applications in biomedical research. Arc Institute was founded in 2021 by Stanford University biochemistry professor Silvana Konermann, UC Berkeley bioengineering professor Patrick Hsu, and Stripe CEO Patrick Collison. Evo 2 is a biological foundation model designed for genomic modelling, prediction, and sequence generation. Trained on 9.3 trillion DNA base pairs across bacteria, archaea, eukaryotes, and bacteriophages, Evo 2 is one of the largest genome-scale AI models. Available in 7 billion (7B) and 40 billion (40B) parameter versions, it features a 1 million-token context window, enabling it to analyse long-range genomic interactions at single-nucleotide resolution. Unlike previous models, Evo 2 does not require task-specific fine-tuning, yet it accurately predicts the impacts of genetic variations, from noncoding pathogenic mutations to BRCA1 variants. It also generates genomic sequences with high naturalness, enhancing synthetic biology and genome design. Evo 2 is one of the most advanced biological models available. It can accurately identify disease-causing mutations in human genes and is capable of designing new genomes as long as those of simple bacteria, opening new possibilities in bioengineering and biomedical research. Additionally, Arc Institute made Evo 2 open source. The code as well as the model’s weights, training code, inference code and OpenGenome2 dataset are publically available on GitHub. The Evo 2 40B version is also available on the Nvidia NIM platform and ready to use within minutes. On top of that, the researchers behind Evo 2 have provided web tools for sequence generation and interpretability, making advanced genomic modelling accessible to researchers. Evo Designer allows users to generate and design DNA sequences, enabling applications in synthetic biology and genome engineering. Evo Mechanistic Interpretability helps users explore the model’s learned features, such as exon-intron boundaries, transcription factor motifs, and protein structures, providing insights into genomic function. These tools enhance the usability of Evo 2, enabling scientists to analyse, modify, and design biological sequences in an intuitive and interactive way. The fact that Evo 2 is open-source might raise questions about the safety of giving away such a powerful model. Researchers thought about that and implemented multiple safety measures to mitigate potential risks. For example, Evo 2 was trained without including eukaryotic virus genomes, ensuring that it cannot be used to design or manipulate pathogenic human viruses. This was confirmed through extensive testing, which showed that Evo 2 has poor performance when generating viral protein sequences. Additionally, the model was evaluated for potential biases in human genomic predictions to ensure fair and unbiased results across diverse populations. These measures aim to balance the benefits of open science with responsible risk management. For more information about Evo 2, I recommend reading the paper describing the model. And speaking of the paper, if you check the list of authors, you’ll see Greg Brockman, the co-founder and president of OpenAI, among them. It turns out that Brockman used his sabbatical leave from OpenAI to work on Evo 2, contributing to the development of algorithms that process and analyse the massive dataset the model was trained on. His work enabled Evo 2 to be trained with 30 times more data than Evo 1 and to reason over eight times as many nucleotides at a time. I’ve gained a new level of respect for Brockman for doing that. Evo 2 represents a major advancement in genomic AI, combining prediction, interpretability, and sequence design into a single model. With state-of-the-art mutation effect prediction, genome-scale sequence generation, and being open-source, Evo 2 sets the foundation for AI-driven biological discovery and synthetic life design. If you enjoy this post, please click the ❤️ button or share it. Do you like my work? Consider becoming a paying subscriber to support it For those who prefer to make a one-off donation, you can 'buy me a coffee' via Ko-fi. Every coffee bought is a generous support towards the work put into this newsletter. Your support, in any form, is deeply appreciated and goes a long way in keeping this newsletter alive and thriving. 🧠 Artificial IntelligenceElon Musk’s xAI releases its latest flagship model, Grok 3 How Sam Altman Sidestepped Elon Musk to Win Over Donald Trump Musk’s xAI Discussing $10 Billion Raise at $75 Billion Valuation Thinking Machines Lab is ex-OpenAI CTO Mira Murati’s new startup OpenAI tries to ‘uncensor’ ChatGPT OpenAI rolls out its AI agent, Operator, in several countries Meta announces LlamaCon 2025 HP acquires Humane AI’s IP OpenAI’s Sora Filmmaking Tool Meets Resistance in Hollywood US Copyright Office rules out copyright for AI created content without human input ▶️ NVIDIA CEO Jensen Huang's Vision for the Future (1:03:03) In this video, Cleo Abram speaks with Jensen Huang, CEO of Nvidia. The conversation begins with a brief history of computing and Nvidia before exploring the future possibilities of AI and how it will transform our lives. As Huang noted, the past 10 years were about the creation and discovery of AI, while the next decade will focus on applying that knowledge to every aspect of our lives. I liked how this discussion was framed around optimism about the future and the positive impact technology can have. Face readers China's Position in AI & BigTech ▶️ Jeff Dean & Noam Shazeer – 25 years at Google: from PageRank to AGI (2:15:35) This is a fascinating conversation with Jeff Dean and Noam Shazeer—two of the most influential figures in AI research—spanning from the early days of Google to current AI projects and what we can expect in the coming years. The discussion covers hardware advancements, the impact of specialised computing (e.g., TPUs), large-scale language models, the potential for self-improving models, the pros and cons of open research, and the future of AI-assisted coding and research. They also explore what the next breakthrough in AI might look like, envisioning more organic, evolving, and flexible AI architectures. The conversation is over two hours long but worth the time. If you're enjoying the insights and perspectives shared in the Humanity Redefined newsletter, why not spread the word? 🤖 RoboticsHelix: A Vision-Language-Action Model for Generalist Humanoid Control About two weeks ago, Figure announced they are dropping OpenAI’s models in favour of an in-house model. Now, the company has revealed its new AI model, Helix. Helix is a Vision-Language-Action (VLA) model that integrates perception, language understanding, and robotic control. According to Figure, Helix enables full upper-body control of humanoid robots, including fingers, wrists, torso, and head. Additionally, it is the first VLA to support multi-robot collaboration, allowing two robots to work together on long-horizon tasks. Figure also highlights speed, generalisation, scalability, and simplicity as advantages of Helix over previous models. Helix is production-ready and runs on low-power GPUs, making it deployable in real-world applications. Robotics Startup Figure AI in Talks for New Funding at $39.5 Billion Valuation Meta Plans Major Investment Into AI-Powered Humanoid Robots ▶️ Meta PARTNR: Unlocking Human-Robot Collaboration (3:01) Researchers from Meta have introduced PARTNR, a research framework that includes a large-scale benchmark, dataset, and a large planning model designed to aid in building and training AI agents for controlling robots in household tasks. PARTNR comprises 100,000 natural language tasks spanning 60 houses and 5,819 unique objects, aimed at studying multi-agent reasoning and planning. It also includes Habitat, which provides high-fidelity, multi-room, interactive 3D environments that mimic real-world homes for AI training and evaluation. PARTNR is open-source and available on GitHub. How Apptronik is accelerating the humanoid robot race This Autonomous Drone Can Track Humans Through Dense Forests at High Speed 🧬 BiotechnologyHow living electronics could heal bodies and minds A bacteria-based Band-Aid helps plants heal their wounds 💡TangentsMicrosoft unveils Majorana 1, the world’s first quantum processor powered by topological qubits MIT team takes a major step toward fully 3D-printed active electronics Thanks for reading. If you enjoyed this post, please click the ❤️ button or share it. Humanity Redefined sheds light on the bleeding edge of technology and how advancements in AI, robotics, and biotech can usher in abundance, expand humanity's horizons, and redefine what it means to be human. A big thank you to my paid subscribers, to my Patrons: whmr, Florian, dux, Eric, Preppikoma and Andrew, and to everyone who supports my work on Ko-Fi. Thank you for the support! My DMs are open to all subscribers. Feel free to drop me a message, share feedback, or just say "hi!" |
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